SubtiBank SubtiBank
yhcJ [2019-06-26 09:11:01]
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yhcJ [2019-06-26 09:11:01]

similar to [SW|ABC transporter] (binding lipoprotein)
locus
BSU09110
pI
5.09
mw
29.04 kDa
protein length
276 aa Sequence Blast
gene length
831 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.4|Unknown ABC transporters]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    984,901 985,731

    The protein

    Protein family

  • nlpA lipoprotein family (with [protein|0481A9C134A6EEC6F111AD0C03E2E345D6A315A0|MetQ], according to UniProt)

    • Paralogous protein(s)

  • [protein|0481A9C134A6EEC6F111AD0C03E2E345D6A315A0|MetQ]

    • Structure

  • [PDB|4QHQ] (from Burkholderia cenocepacia, 34% identity)

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|9BFC99C85F7BEA5FEA6B8E82D205EED02375240E|yhcJ]
    description
    [pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A655 (yhcJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/655 NBRP B. subtilis, Japan]
  • BKE09110 ([gene|9BFC99C85F7BEA5FEA6B8E82D205EED02375240E|yhcJ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09110 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTGACCATACTCCTAT, downstream forward: _UP4_AAGAATGAATTCGAACATTG
  • BKK09110 ([gene|9BFC99C85F7BEA5FEA6B8E82D205EED02375240E|yhcJ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09110 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTGACCATACTCCTAT, downstream forward: _UP4_AAGAATGAATTCGAACATTG